Documentation

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Navigating on COSMIC²

• Accessing web server
• Data upload

Data formats

All data is expected to be in the format of RELION STAR files with either particle stacks, micrographs, or movies.

Read more here.

Tools available

Preprocessing of cryo-EM data: motion correction, CTF estimation, & particle picking

• Preprocessing pipeline v0.1

RELION-3.0 tools: 

• 2D classification
• 3D initial model calculation
• 3D classification
• 3D refinement

Computing allocations

COSMIC2 is operated on the NSF-funded Comet supercomputer at the San Diego Supercomputer Center. As such, there are no costs associated with running jobs.

Read more here.