Trying to ask a question? Please email firstname.lastname@example.org for any help.
COSMIC² supports the cryoEM community in the following areas:
- Submit cryoEM jobs from the COSMIC² science gateway website
- Super-user access to submit jobs directly on SDSC-Expanse
- Computational consulting
Below is information related to the science gateway website submission.
Submitting jobs on COSMIC2 science gateway
Tutorial for uploading particle stacks
How to use COSMIC² science gateway
- Accessing web server
- Data upload
- Available tools
- Checking job status
- Terminating existing job
- Downloading results
- Data management on COSMIC²
Micrographs and single-particle stacks are expected to be in the format of RELION STAR files.
COSMIC2 is operated on the NSF-funded Comet supercomputer at the San Diego Supercomputer Center. As such, there are no costs associated with running jobs.