Uploading cryoSPARC-extracted particle stacks

Have you wanted to upload cryoSPARC-extracted stacks into COSMIC2? You’re in luck, we just finished documentation for how to do this!

Short answer – place a .star file that you convert from a refinement .cs file using pyem into the extracted particle directory, and then you can upload with Globus. That’s it!

PLUS we have pyem as a tool on COSMIC2 already, so you can do your conversion also on COSMIC2.

Have fun! Take a look here for a tutorial on how to upload a cryoSPARC-extracted particle stack. 

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